NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318536_10038798

Scaffold Ga0318536_10038798


Overview

Basic Information
Taxon OID3300031893 Open in IMG/M
Scaffold IDGa0318536_10038798 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2264
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006947Metagenome361Y
F037953Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0318536_100387983F006947GGAGMGFQSLRLRQQVASVTMDGDFAYFQVGCGHVICRREGNRIALIASPDCQLAASAGLDMVTVAVSSKKDEKH
Ga0318536_100387984F037953GGAGGMPRYHFVVRAPDHTHDDPDGTHFPNHDTAREHGHRIVRELADGGYKPGNAVLLVQDETRQTVHSTTF
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