NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310893_10089791

Scaffold Ga0310893_10089791


Overview

Basic Information
Taxon OID3300031892 Open in IMG/M
Scaffold IDGa0310893_10089791 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1107
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046615Metagenome151Y
F058352Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0310893_100897911F046615GGCGGMTVQPSAGGPRRAIWGLVNDGYALVAKTANLTHDEAFELCRVPDIGDPSAYLDHGVAYLQAPKWGHVFARYFTNAERDSAGRASLVYDVVALSDADFAALGNDAFRALPPFAGDRKPERFGELPLPVITPCDDATEAARLATLLAQVDQAAVTTLLGALLAGDRVLCIAPGLRLDTVECLTLLLPPALRPLVTF
Ga0310893_100897912F058352N/AVYDGDIPPNILREMTRARGLILLINPSFVPDEGRERYYMRFFDRTLGRLKFALADAARKGDRVPFDPRTNQLTIPVAVCLSQIDRSPQFMDAEPKTLFEETVGDTAPILYSWLTTFDIFKLSALGRPLRHVDGREVLDGEPQPKFVHLPISWIVAQTGDRHQRHGDAALGRGGAR
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