Scaffold Ga0306925_10163484

Overview

Basic Information

• Taxon OID: 3300031890
• Scaffold ID: Ga0306925_10163484
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2397
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000252	Metagenome / Metatranscriptome	1455	Y
F000892	Metagenome / Metatranscriptome	846	Y
F005829	Metagenome / Metatranscriptome	389	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306925_101634841	F000252	N/A	WQNIDADDLPAEVKKSFDAMVEAEAAFKADLEKLLKNEGHMPEDKFLVMSRKGKRLGVAYASAPRGEGGAGSLKFKTK
Ga0306925_101634843	F000892	GGAGG	MTNRRRSATTRSVPAQTPEQLLEQAQEHIRPLIGVIDRLNEANAEDELRVINRQLARLCFRVQPLPND
Ga0306925_101634846	F005829	N/A	MKSNDRRATAEFLIATIEMAIARGCKHYNERGELLATTLAVLECLQREGFVTVEEPDIAC