Scaffold Ga0306925_10029395

Overview

Basic Information

• Taxon OID: 3300031890
• Scaffold ID: Ga0306925_10029395
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5584
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006521	Metagenome / Metatranscriptome	371	Y
F008631	Metagenome / Metatranscriptome	330	Y
F042789	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306925_100293952	F006521	GAGG	MKPDEIKVNHCYSMMPINGRRTIARVTNLFNFTAMAAYEYVKRGGTESLAMNPTAVRFVWRHASYPTGWSKRQELLLIDEFVLAAGAEVACS
Ga0306925_100293956	F042789	N/A	MGTQRAHYEPFAWWLARERIGAGLRDYYAASQELPSQTAALVGRLGDSEGDPLRKGPNAPSLLSRLDAIEGNQLLRACRTRLRAQYRRRRFGSFT
Ga0306925_100293958	F008631	N/A	MLALSDSQLRAVWAAADGLPVEKRGVFLGRLVAQLHLRSSRFTTADLEEVVRMTLSGLVAQSAA