Scaffold Ga0315318_10028745

Overview

Basic Information

• Taxon OID: 3300031886
• Scaffold ID: Ga0315318_10028745
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2872
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010829	Metagenome / Metatranscriptome	298	Y
F061900	Metagenome / Metatranscriptome	131	N
F084706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315318_100287452	F061900	GGAGG	MTDSSSDSDSYSQRDEMAAMAGELMEAKMQTQQARNQMTHMLRMGNFHLEIVPNKDIDIEKFFDKTMNNIFERFGKDAFEVKVSGMEGMKPKDNGGMHG
Ga0315318_100287453	F084706	GGTGG	MKAPEIGTTLGKCIFDNGIIVEGQNIRSQYATLRSGRWICGECLLDMLPTALEATQSHMIEEAEKRDKLIAEVKKYGWLVNPTTGKLEKL
Ga0315318_100287457	F010829	GAG	MGNLADHRRLREEQGLYKEDPGDGTYTKDELDYIPFLGNNPSEEKPAVYTARFNVREGQIELEAKRSGGKLYITCLADEKHNRAIFECVERFVAAIFDGTARKISEAQPDDSEMMKLKKHIDQLEKENEEHIETLVQLKKIMK