Scaffold Ga0315318_10004501

Overview

Basic Information

• Taxon OID: 3300031886
• Scaffold ID: Ga0315318_10004501
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6364
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029239	Metagenome / Metatranscriptome	189	Y
F064790	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315318_1000450110	F029239	GAG	MSRNKRLTNLNSDKSLQGLVIDWQFANAEMVNDFVETVSNYEPTYAYA
Ga0315318_100045017	F064790	AGG	MIKNIVSCGCSWMYGSGCYRRLDQRVSTLFAKKYNAEDINMAKDGGNNDRSVRKIVDWVIQNKDKLDETIFLLGLSGPERYDLWDEQQGCYAGGSYDEDRPDDPIIGGKDNHNFLSGRTERLMGKYHWNTLRDYDRTFRNVILLMGVLDSLNCKYLIFDCIGWTRPNIPSREDYVGEDANWEYDDYIKLLRYVIDNPLYQEILTHKNFYSKQCWAEFCSPRGKGLFAAEDKRMFFGAPKDYEGDWGHPNSKSNKLWFEVLTNYIEENKLW