Scaffold Ga0315285_10240785

Overview

Basic Information

• Taxon OID: 3300031885
• Scaffold ID: Ga0315285_10240785
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1406
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016125	Metagenome	249	N
F023831	Metagenome / Metatranscriptome	208	N
F026503	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315285_102407851	F016125	N/A	EPTRAARAVLFYRRDIGMAAVRDFDPTQINSDFSAILEQAGVAFTYQGVSVTGIWSSSRDAFSEFEDQRRTDSKFTVFLLTSSVSATPQVTQTLSRASITYFIERVTLDAEGAGCEIEVCKSI
Ga0315285_102407852	F026503	GAGG	MIDIETSFERLEMALHDLAKAARVDLGLVIKEEAKYAIQTIVKFTPPKQKAQGVNAVRGDFAKLAEPLVHQDLLAKATEGGFYKSMARYVRNRNVEKMRALLRNPNLSHYYGRRLLESEDAIKKFHRFQQNKRGRIKGKPQVLAFGLDFRRVRKTMEGRVGWTVSGWNSSAKVTGARYKKFSDKLKPQAGGNIRFGSVRSSFGPQPFIKATAHNVKIPDYQRMIDGAINSRVKTTERKVAAVLANKAVNLGFTRVIGTMQIKTPDA
Ga0315285_102407853	F023831	N/A	MSTRTNIRTATANALTGALVVPTANILRGRNNTIASISFPAAAVYAVSEQIEVRTLGPSNRTQYRQLQLVVDYFTVESGT