Scaffold Ga0315285_10226149

Overview

Basic Information

• Taxon OID: 3300031885
• Scaffold ID: Ga0315285_10226149
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1467
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003441	Metagenome / Metatranscriptome	486	Y
F033720	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315285_102261491	F003441	AGTAGG	MTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYLQITFVALTGQTLPFDINDSLSLQVKDTSAAYVNIFGGDITDITVSVGATGSIATVIQYTVLAMGSLVKLAKELYLGTISQDEDGNQIYDLLSSVLLGTWNDVPAASTWATYDATETWANAQNLGLGEIDTPGLYTMENRAADADTIYNIASLIANSAFGYLYEDNEGNIGYADADHRQTYLLANGYVDLSANHALGQGLSTITRSGDIRNDVAINYGNNFGSQETATSATSIATYGYKAESIQSVLHSTVDAQAVADRYIAQRAFPLPAFQSI
Ga0315285_102261492	F033720	N/A	VGFDEAKESLGTALLPQVEKFITFINDVGVPALNGFIAGLTGDAGLNAALSETQQGAASFGRTIASISGIISGFITFLREAIGLVVSLANEFIKVVNIIPGVNVSPFSNPAPSARLPSVPQGKSNFTYGSGNPVNITVNAIDGEGAARAVAGVLNQSAARSAGLLVGGTVGR