NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315285_10143405

Scaffold Ga0315285_10143405


Overview

Basic Information
Taxon OID3300031885 Open in IMG/M
Scaffold IDGa0315285_10143405 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1998
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012111Metagenome283N
F091623Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0315285_101434051F012111N/ANITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSGPLIFDGVGIRRANVDEIKCGRMMAYVNGRIWYALENGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMGIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQAISLLTNGALGSRSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGADGSIQFWEISKAEKEDNSVANGPNSIEWLVQTRAYNFEIPFGLKRLDSGDIFIDALDGTAAFNVQYRPDQYPGWLDWANWSECATTNQCSNLCPIANFQPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTITGFCRIKSVRVHAYDVQESAVGECRTFQGCKTLEACDVNPFTYTSE
Ga0315285_101434052F091623GGAMANLTLINLVPPSLPVNYCPTNYQTLANDIISGTQAIFNSTIGNSFFNFGASFPAINNRVYPWLDDQGLWWIFTQGFWIRKNTVEAAGQERRMFVGSTIDLGLYDGGDGAVTVTSVTGPMWEIDT
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