Scaffold Ga0315285_10040454

Overview

Basic Information

• Taxon OID: 3300031885
• Scaffold ID: Ga0315285_10040454
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4445
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315285_100404543	F046179	AGGGGG	MMPQWESKALALITGAGVSVDDAPWVLECIQKAADDIAEMDEADRFPLYMEYHGNDKAALCNLDAETFADVLACLGIDLHRLETLWERKHLDPPTDEVDWALE
Ga0315285_100404545	F072111	GGAGG	MKKQMILALAIFGHLFLFLFVDSLFEAPTKWKMWAFYGSSLLSVAVWGAYVIKDDWDGGGTA
Ga0315285_100404548	F056323	AGGA	MIRLFSLHEIAEDLKLPPAVVALWAADGMIPHIMRDGLPLFDPVAVGRHIAEQLNNLNKPTNNDGNKPTTN