NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315285_10039542

Scaffold Ga0315285_10039542


Overview

Basic Information
Taxon OID3300031885 Open in IMG/M
Scaffold IDGa0315285_10039542 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4509
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005387Metagenome / Metatranscriptome402Y
F016369Metagenome247Y
F025652Metagenome200N

Sequences

Protein IDFamilyRBSSequence
Ga0315285_100395422F016369N/AVKNNKAFTLIELVLAITILLGIIGAVVINYDSMVGNSRYFEARENLKTYLINLKHQSAFQQKQFELTFDPDYNMYSSFENFYLLDAVTNDLKILDTSATKIVFFLDGTVQESYIVTSNLEGTITNTFIINVIGSVNYEGNTNIVIEKKESDTE
Ga0315285_100395424F005387N/AMEKLNRKGFFSTLFGGIACVVAGTSVKASEPKPVVEKVLTCDKLAFTHSSGASCVMSFKDSDNFTIRVNNSENISINIHSPLKKPNFVKTETDYGFYGNKDTRMTIASNGTIGLGTDYPTAKLDIVDIRG
Ga0315285_100395427F025652N/AMGPYTFFDATRRLLNNQKVPISVSECTYEKFYEFVSKEVVEYKKFNINNFNLKWVPTLPNAWRPGPFEDIDLREKMIDRMGTMTKYGKFHLYGFDSLMQALQWYNNQEELQFLEDNQFRMYKFQIKSKNLIVGKSQSVYFPDINDDMDMLWISSTKLSDLNKSININNTTQSINKLFV
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