Scaffold Ga0315285

Basic Information
Taxon OID	3300031885 Open in IMG/M
Scaffold ID	Ga0315285_10000002 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031885 Open in IMG/M

Scaffold ID

Ga0315285_10000002 Open in IMG/M

Source Dataset Name

Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	499427
Total Scaffold Genes	545 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	440 (80.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

499427

Total Scaffold Genes

545 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

440 (80.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.508	Long. (^o)	-110.3268	Alt. (m)	Depth (m)	93
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.508

Long. (^o)

-110.3268

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003098	Metagenome / Metatranscriptome	507	Y
F013170	Metagenome	273	Y
F069682	Metagenome	123	Y
F097611	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0315285_10000002315	F069682	AGG	MMTKMAGEMLDRKLKLERVEACLNCKKFVECDDIGKFEECDDFEEVEGEAWAIKKLGESH
Ga0315285_10000002519	F003098	AGG	MTMGVALARPLKFIFQFPPIHGIFDAGYGVVYIFGGLHESEIENIIVHETLHYVLLRVAGKKASLKLDRIYTELDN
Ga0315285_1000000266	F097611	AGGA	VSGKEQTKQQEPQSTEEEKNIIAVSDLSPSVVELLREFRRTSGARDIPRVVEDITFSVFELMKLVNTSRDPRIYPQDAVRVMDTVKAVLEKFTRFGKPRQLEEAQKDIKTS
Ga0315285_1000000295	F013170	GGA	MSIHLHTTITKKTDDLIEQLTTTYGTKNRVIERALETLLRVERVGSCEDCAIKAKMNEQANLREALDLTSVGRKTIDSLLEVAIGDKTIQDFFVEQKVEAKNTVEILKGSVAWKMPSNFKEFMIILKEIESLTRLFEIASYNEIDSTVILRPNAFKRVPEIVALQVTTILEGLQVSFDFRVMGDDIAVKMIRQDLYPLRKKEFGGLLDEQVEKRLSSVTPVLFRNTLMLVGPAFMNWAEKHLEEPITDFGSLLEDIRIALGTAELPKEPREFVKSLLSAFVKMNWFKQAKILREVDEKTLDISFQSTTPSVAKLSIVMLSVVLATRGWKLLKFSAEQTSANISIQYVGSEDQSLLDQIVEVSLYQTIGRQFLDVIPVPRELFNSFASKVYESNKEKFDEIYRTMGVRVSNAIRMLARNDPEKIRKLAQTFILKNMGSTQPDAEIRLVDDEHFTVIFKKMDTLIMNSQRTLIESIFKELGYEISTTVFQNLLSFKLKPLERPALEPLPRKKLMQALINEMSASSCDEAFAIIKEPIDEMFPENYPWTIREVGDRIIDMYRELDIEVEIEYFEGGFTLKYKTCPYYKLVKTQQKTWLCNVRKKTLEYIISRVGHGKKGRIKIIKSLLQNEHPCEYAVFLTGFLERDEKTS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315285_10000002

Overview

Ecosystem & Geography

Associated Families

Sequences