NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318544_10338497

Scaffold Ga0318544_10338497


Overview

Basic Information
Taxon OID3300031880 Open in IMG/M
Scaffold IDGa0318544_10338497 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)584
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023673Metagenome / Metatranscriptome209Y
F057178Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0318544_103384971F057178GGAGGMNEVPKLPQARMYLQAAQWGFDELLTKQLSEHAFRFYLIGILASLRAVQHALMNHDSTLSDEHKRVVKDWLQATPLSTPELDFIRKSRDLILKRGSFESYAIVTESSTGEEPNIEITGTSYELAYYDEAGERHDLEKEIR
Ga0318544_103384972F023673N/ALMIAHGFTVAQMVELVRAGLATVNSERLVAGGRTVEVAQVQITEAGRRALEG

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