NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306919_11061630

Scaffold Ga0306919_11061630


Overview

Basic Information
Taxon OID3300031879 Open in IMG/M
Scaffold IDGa0306919_11061630 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)618
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000284Metagenome / Metatranscriptome1378Y
F022273Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0306919_110616301F022273N/AFKLATQAGEPSLDHWGFAVQTAMALIVVVLFTLTSAALEGFLLGDESLSALEAAMSLNVD
Ga0306919_110616302F000284AGGAMKALMAAIALLCVSSTVLAHDIYGNLRDRDGHLCCGGQDCKPVEAVVLPDGNYYLPGTDEVIPADVAAPSPDDRFHHCIYYPLAKVVDPWNGPVWEDKPKTRCFFAPMNST

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