NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306919_10409150

Scaffold Ga0306919_10409150


Overview

Basic Information
Taxon OID3300031879 Open in IMG/M
Scaffold IDGa0306919_10409150 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001404Metagenome / Metatranscriptome704Y
F008916Metagenome / Metatranscriptome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0306919_104091501F008916GGAGMSDKFDGLDATEKAGIDAALNRCRDLAAQIASELRNTRPEYFVDKLSLADFYASLEHAAHLLGQKNRQSAENTPAPTVKGSQARGG
Ga0306919_104091502F001404GGAGGMRKSSLCAVAATLIATGFGVWAAATTTDARVAGPPIGQAVEPFQLMMNAKELPAVEFVDYTFVFH

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