Scaffold Ga0306919_10286784

Overview

Basic Information

• Taxon OID: 3300031879
• Scaffold ID: Ga0306919_10286784
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1246
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000307	Metagenome / Metatranscriptome	1330	Y
F000777	Metagenome / Metatranscriptome	895	Y
F001448	Metagenome / Metatranscriptome	692	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306919_102867841	F000307	N/A	EWNDDDYDVPADGIIVGRIMKAAAVPVGQSWLWTSGFEYHEDHTPTHGYEATREAAIAAFAKSWRQK
Ga0306919_102867842	F000777	GAGG	MSDKRRHKFITLFGGVAAAWSLAAHAQEPATIGATQAMTATVPQIEIARVKPVDRAPPNLRLSNSLIDLMKGFSLSSSQGIGGAWETPPNIATPDAFAERYGRW
Ga0306919_102867843	F001448	N/A	MKRKSRRVYKPRVVGGQVMMQADLERLHKYMLEIEGVDAISDEMRAVVESEWPELAHKLPPKKPQS