Scaffold Ga0306919_10032202

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0306919_10032202

Scaffold Ga0306919_10032202

Overview

Basic Information
Taxon OID	3300031879 Open in IMG/M
Scaffold ID	Ga0306919_10032202 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3317
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003480	Metagenome / Metatranscriptome	484	Y
F027982	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306919_100322024	F003480	AGAAG	VTGRTRLLSFGEAIAVVRQRLNASSGRAAIVVREALKSGELRIIRDDYIDPISGSLFAIVEEDFLDWLNRQVSTTATTPLAARKQPDRERARQAAIELWGTVGPPDHLSNSSICREVIQWLKKNDRAADISGATILRAVGRR
Ga0306919_100322025	F027982	AGCAG	MPRFLLLAGIVLLIGDYSFAQDSPDPTPLQCQLIRLAVAQYGFAAARRHALETYGPEAVKTGDKCFTNVGLRLRARTKRHGE

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