Scaffold Ga0308404_1038983

Overview

Basic Information

• Taxon OID: 3300031878
• Scaffold ID: Ga0308404_1038983
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 988
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006183	Metagenome / Metatranscriptome	379	Y
F056637	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308404_10389831	F006183	AGG	LKVPATVGVPEMVMLPPEKVPVTPAGKSANVAPVAPVVLYVIGMIAVFTQTVWLSVPGAEVRVMVLFGCTMMVPVAVTFPQPPVKV
Ga0308404_10389832	F006183	AGG	LKVPATVGVPEMVMLPPEKVPVMPAGKPENVAPVAPVVLYVIGVIAVFTQTVWLSVPGAEVSVMVLLGRTMMVPMAVTFPQPPVRVTV
Ga0308404_10389833	F056637	GGTGG	VIGVIGVSTQTVWLSVPGAEVSVMVLLVLLSCTMMVPVAVTFPQPAVKVTV
Ga0308404_10389834	F056637	N/A	PENVAPVAPVVLYLIGVIAVFTQTVWLSVPGAEVSVMVLLGRTMMVPVAVTFPQPPVRVT