NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1002260

Scaffold Ga0308404_1002260


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1002260 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5400
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F007172Metagenome / Metatranscriptome356Y
F009403Metagenome / Metatranscriptome318Y
F012676Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10022601F001381GAGMQYVIATLYVLCWLALAAGVALVLPRWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308404_100226010F007172AGGAGGMTTPNALTALQRRAFAAALRAAKNNAYCRQVGGFAIACLSDGTIDWFPTGQPPHQGGEPDRNAVILGRWRWNYKRWSRIA
Ga0308404_100226011F012676AGGAGMNSIKLAAGWDGNPKSLTSPEHNWIRFLEAQGIAYAAHLDEPAGWRLVVHDERRFTRALHALRKYGVYGICEWTYDIH
Ga0308404_10022602F000855GAGGVDWLEDFWSKIVGWWDQVLAGVHNGIVEWINSLVSIWNGWMDSLLHPAQAMPSVPQLRWVVDWLGDIADYTRLMYMLVDYVAYAGIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308404_10022604F009403AGGVFRITRRGRGSGRAPALSVIRSGARLEVREGRYGQGALYAYCDVDDTLAAHTLLLTFADMRARVIYIHDSLPLISERKFFDACSGSGPVLPDADSVALADRVADADSVALADRVADADVYAERCRVW
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