Scaffold Ga0308404

Basic Information
Taxon OID	3300031878 Open in IMG/M
Scaffold ID	Ga0308404_1001100 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8102
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8102

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (73.68%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F007172	Metagenome / Metatranscriptome	356	Y
F008135	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308404_100110014	F002372	AGGGGG	MPTRREDALWSVVHRRASHLRALLDALDDVDMSIAYELHYYPYAIVELLRVREDAPPVVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSLGGSDSWA
Ga0308404_100110016	F008135	AGGAGG	MRAMNDPRTERLLVSAGASIARVLDARQRHAVALALEVCWYIVAALPPDDELTFGDMVRLLRWFATGFREADDGDE
Ga0308404_100110017	F002229	GGAGG	MVTLLTLDGVEDVDYVPSDAEVRASLDDAGLYGMVLNGVTWMRLSSGAGWWTVICNRRVTATLAAVGWCWVADGLGARGYWSPALACVPAEVRALCGGCGGCVDDDDGGDEE
Ga0308404_10011002	F000642	N/A	MQEMSVALALCAVGAAIWYMRRREASGRVRGWLLLYDDLGGWRVLPATYGDAGVVADGVTYPASLPTVRVGGALVWIARCDSAALIEHQALERAREAAALASLWKGGGQWIDFLRIAGVVLPVAFAYFTWAQVASLQSLVAQILALVGER
Ga0308404_10011003	F001381	GAG	MQYVIATLYVLVWLALAAAAALWLPRWALPAALVQLAVAYVMLRSWLTAAAGDD
Ga0308404_10011004	F000855	GAGG	VEWLEDFWSKVVSWWDHASANIYNGIVSFVNSLVEIWNGWMDSLLHPAQAMPSSPQLRWIVGWLGDIADYTRLMYMLVDYVAYAAIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308404_10011009	F007172	AGGAGG	MNTLERRALAATLRAAKRNAYCRAVGGFVIAQMSDGSIDWFPIGQPPHRGGETDRNAVILGKWRWNHRRWSRIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308404_1001100

Overview

Ecosystem & Geography

Associated Families

Sequences