Scaffold Ga0308404

Basic Information
Taxon OID	3300031878 Open in IMG/M
Scaffold ID	Ga0308404_1000330 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14796
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (90.48%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14796

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (90.48%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013092	Metagenome / Metatranscriptome	274	N
F022362	Metagenome / Metatranscriptome	214	N
F056952	Metagenome	137	N
F070715	Metagenome / Metatranscriptome	122	N
F089597	Metagenome	109	N
F097406	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308404_100033014	F013092	GAG	MNAVLNDFFETLLRSRGVRLRLPNGSEIDAVVARRDSQSVLLGGQVAADTTTQCFVVRASDLPAGYWPRVADEIVNVATSQRYIVVRAIGGAHATTSSDPYGFLVRVWTRLAS
Ga0308404_100033016	F022362	GGA	MIASLLDAVVDTLNGPPLAASVVASKTWAHYWVLARETPDVCVVTFIRSERERLSRSRFRFLLDVEVVRARPYVDASSVETVVNDVHSIASRLTSQEVLERGGIAYAFESISFSDPLYEIEEVFDESSFVRASVTARYAVLESL
Ga0308404_100033019	F070715	GAGG	MRHRFTDEHGREYEVARISFARYHDLRDHGFDLAKWASEALARVVRPDTTNDNALSQRFDYEEFVRILADGAVFRDRKTAEALLTVLCRDSLSRHGVTANEVFESLYGRSIWEAEVAFISRILDFFEGHPIMREILGAALKLLLSKVEASTAISSLTSGTSPVTSA
Ga0308404_100033020	F097406	N/A	MYESRLFHDHCHYGIIAAAIANAFRGSESPTIRVEDIFPDVVEYLERFGVRNDNELPLLTKDDLKSWLAQQKSERVVRVSS
Ga0308404_10003307	F089597	AGGAGG	MPRRLSWDEVSACIDRESVERYGRYLRGVVEGETYVPKATTTPSLVNRTIVLGVVYDWCRRRYRHRPFAVVIRAFSWCARFCYPFHPVFARFGIESEDVIEALEWIATDSYSFRFAPASYGVTIVSEHRDGDRRARHYFAPVPLVAPRIDDPTAVPFRLRMATRLVMEAALRAICVVDDDGNYDEIAIRATVRDLLEVAAPLVTPN
Ga0308404_10003308	F056952	GAGG	MKRPPSYRLLDVFGNVVYSANDLRKVVKRLAQSLVKPTIYSAQGRRHVVFYLENGVVKCYVGNFGESRKSVEERVIRLFRASDIARRVRRHV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308404_1000330

Overview

Ecosystem & Geography

Associated Families

Sequences