NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315314_1000005

Scaffold Ga0315314_1000005


Overview

Basic Information
Taxon OID3300031877 Open in IMG/M
Scaffold IDGa0315314_1000005 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)551873
Total Scaffold Genes594 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)465 (78.28%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004454Metagenome / Metatranscriptome437Y
F006925Metagenome362Y
F008290Metagenome335Y
F009011Metagenome324Y
F094709Metagenome105Y
F104376Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0315314_100000530F004454GGAGGLDRSRRAVLEVREDLHREIRKLALLNDLRIYELTSAIIKEFLDDQEQVKALVRKLKV
Ga0315314_1000005333F094709GAGGMSLDEKSQRLGEMLSQIRNNFQGAIEAIDTFLNFLGKPKDPDHPEVYEKLNWETRTGNKGEYQLLRKDNCNNTQLFNHLEAMLKQNKNNITIGDYHYWAGEQGYIFRRKRKNSK
Ga0315314_1000005337F009011GGAGMVTLIEWTAILSAVAGLSATLFILLQLRHMDKHRDLEISIKLFEWAETERLRKAFRWVETEFQFEDFGKYKAEVEENFEVSDYPYQVEAFFEEVGFLVNKEFVDIDVIVDRLGAYIISNWKKLEPWTLVIRKERSDKTFGEHFQELYEKTVAYMKKS
Ga0315314_100000535F006925GGAMALEVEVLEGFGRDATPQRKWMQMWETLGKRILKMPKWMQDIVLEDINTAIRNRVATMEMISQHAKRSH
Ga0315314_1000005382F104376AGGAGGMPLAWDTKTGVAPGTETTIVSYQVGEGRLVKLDGFIAFGTCAAIYRLCADGEVKASYMTSEADRNAYVIFRTEHVTGPKTIAVKVVHFLSAAPGEGQDFEGTILGG
Ga0315314_1000005395F008290AGGAGLPDRIRMKIGRASYMQRVGEKDYLKRRSRIESVPMSKLVKMARLSGRTWRLLQEGNDFFLILEALTWEEEEKQIEKGKYP
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