Scaffold Ga0315314_1000003

Overview

Basic Information

• Taxon OID: 3300031877
• Scaffold ID: Ga0315314_1000003
• Source Dataset Name: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 861596
• Total Scaffold Genes: 984
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 707 (71.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7726
  • Long. (^o): 121.4938
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015693	Metagenome	252	Y
F039458	Metagenome	163	Y
F053037	Metagenome	141	Y
F067364	Metagenome	125	Y
F093178	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315314_1000003207	F015693	AGGTGG	MTKMIMYFNLRNGVSEEEFVNKAKELLRYLEDKVEGLGSGKLYRHDYFGANPRTYQMHMEMRDFGTLDRLVAFIKKDAKAARLFQENWWKLIDMDTHYDEFVREIPL
Ga0315314_1000003228	F067364	N/A	VTPLLEKAALLIKKYDKLMSQHPGKWVAISNDKVIATSENIEELTKKIEQLNDVLIAYSPTPSEKKVGYLL
Ga0315314_1000003401	F053037	GGA	LLNNTLVNFVGAKELIFITICDVRPGQDETVYRQIEKLRSGRGVTPLVIGRLFEGADVMLLLHSADIETLDDYLIENVRSVMDIEELIVVPIYEFKLLSSFDFMVEPEHEGTMTTPLESEDLLFFMAKVDVAPTKDRAVYERVLSIEPTDEAIPLMTGHTFHSKEFDLVVFFLAKSLESAWEFVKELRVIDGVWDTEVNLIAHFEGLVTLKRFKELVSMPTFGQSPSKSGGKESCKVKRK
Ga0315314_1000003633	F039458	GGA	VKKTVEERIRALFAEHSIPPMEVIIPILEKTGRGEKELTAQIYDTFTSVAKGIKEILKLKDKNMETLARVCETVFIVSGEKFEPIELTDSRFSLNMLDCPLLHVGKDISFNVRSRFCDLMCTTGSKALMDTVLGSHKCNCTWDKALIKGTGKCTAVFELVKTT
Ga0315314_1000003634	F093178	AGG	MSLSHEDMRTILTTTTEAFGVLLGIITAGLMFTQGKFSELASQLAEKSPDYLAKVLSLEKIHSIETRLLALKKAFTQLAASTTIAEERSLYERIATKVSSIFVDFAVLSNLKLRQQGLVDTRFSISEMDSSLYKVYQKRIQSINKEWQIFNVIKQITDTWEAPTPFSGGRSNREMPLQADLRSSIAILKLKEDVDKGSTNIRTEIAKTSSELNAELSEISKRLHEDRIPQILPQMKLASTIRGKYFYLTLAFIAAPLLINLIILTQLSETTATFFQPIISITSLLSVMGVIFLLLYIHKILNV