Scaffold Ga0315314_1000001

Overview

Basic Information

• Taxon OID: 3300031877
• Scaffold ID: Ga0315314_1000001
• Source Dataset Name: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1689453
• Total Scaffold Genes: 1843
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1522 (82.58%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7726
  • Long. (^o): 121.4938
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013170	Metagenome	273	Y
F029139	Metagenome	189	Y
F032173	Metagenome	180	Y
F036057	Metagenome	170	Y
F040986	Metagenome	160	Y
F048040	Metagenome	148	Y
F079543	Metagenome	115	Y
F082076	Metagenome	113	Y
F083516	Metagenome	112	Y
F083517	Metagenome	112	Y
F096491	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315314_10000011076	F040986	GGA	LCACRKCGSRFEFTGTYEKFNDFMDSESFTCPHGHEEKNPPRAYLQLLETSQPHPTQDWKPTEGRNYVNILDYQTARINGMQIDHIGSGLYVDRKTGKKYDYEEDMKGNRHYFEVPA
Ga0315314_10000011164	F048040	GGA	MISEAEILHIINEIHQYDVILVELKDGTIFGIGKGTQSAPEYFRARATARTTKDRRALSEALAARRPDAHVDQITLETLLNGLRGMKTRHVWLERRTEPRHEMAFLNLKELASFLRRQQV
Ga0315314_10000011531	F036057	GGAGG	LRDDVIQRQLSDAIVRGDAETAEAKARIIAQYAKDPTEALDDLYDAFRAAESLHALGEYDEERFAASASAARSSLNVLKSSLIPKQTRFTARICVGPVSGGNDAMSAIMAAMLAAAGHEVTDLSRATTPKELLRNAEQSRAELLVVSFNEQTAALAREFVNEFESGGFRNRFDAIAFVRGPQSIAVESGSFTLVAHEPLELLSKTTEFLIRSRGSAQEEPTD
Ga0315314_1000001158	F032173	AGGGGG	LTLTVQGSSGLISIWWLVLLIVLVVFEGGFLYGAYMSGEACLERVFGIFTGLVLITFAVILYAARLIFYD
Ga0315314_100000121	F079543	GGAGG	VASELARELGRFPFTKLKPRSFRVHIASLTEQELEKHPVRIWIETEDIAKVVKIAGSARILRTYPHLDLIYLEAYASQLASLVASDLVRSVWNDLPVKAEGCLVVTQTDSRARPVEAWPH
Ga0315314_100000123	F082076	GAG	MQSRRKLVEHLLRKHELILTRAVSGHDRFAALKNLERAEKRFLLSFLTSLGGGIYWLTMELWGLNLSDFVGLPINRVASIALGAAVTATSILAILAYLSIGLVVQRAVEIKPRESD
Ga0315314_100000126	F083517	GGA	LVRPRKFTDKLWVRMPPEYIAVLKAFAFHSGVPLAEYVRDIVHDHILQRGGAFRERGGALRALINAGKAWVIAYHGCVAIAAGLPGKERRAELEKLTWEAVKKAHEFFETEEAAKNAKYRMMALQAIALITRAEEEILADMDKAEVDQIVQRIEAALNVMDKAAGQIPTKAARSK
Ga0315314_1000001321	F096491	GGAGG	MSRQSILVAILLLAALGLATCPNVYAWTSSPQITYSVDGSGDAILTIQFDFSQMSDPPTPSHHPTEFQVRTSTDGSSWTELPAVAISPTPTTTVFTETYNLGAVSGSIQVQARLMCSIHGWSTWGPDRATPVPEFPSGMTAVTSLLVLFGGALLFRRKRLEASV
Ga0315314_1000001496	F083516	AGG	LREQGVGDLTLYGSQAMSVYMKNPLRSKDLDLLSSQVGLRQAEALGEKLSEIKDVEYWSTSVQTRNFDDRKMTTYATELRVGGRPFFVEVFDSILDGQPLSLLQPYVELTSRWRLEFRTPSREATVALRLAFRQPEGITRLNATRLNNFIRENKRSLDLEVVASIMKRWRIAEWVERNLIELHQRHRIRILYDHRMVPRIAEKSPKHQK
Ga0315314_1000001523	F029139	GAG	MLRLSVKTKLTPLEALDRANKYFEENGLTLIETIAHLHGQGGFTEIRDSGGKLVGKAEYSSKTVLDELTKSATDRFGFEPVTFSLHFHTPLGYVDVSVSNEKPAEVTLETMEYDCQVKGFADGLPKA
Ga0315314_1000001874	F013170	GAG	MSVHLHTTITKKTDDILEELARNYGTKSRVLEKALETFLRVEKIGSCDDCAVRASVAEQTNLRQVLDLTSVRRKTLDGLLEVGLGDKTIDDFIQDQKTEAGNTIEILKRSSAWRSPSTFKDFVLILQEIQNLTRMFEVASHNEIDTTAILRPRTFKRLPEILAFQVASILEGIEAPFDLRVMGEDIAIKMIRPEVYSLRKREFDELLNQQIERRLANVAPSLFRNSLMLVGPAFMTWAEKHLEEPVTDLGSIMEDLRIALGVDELPKEPKDFVKGLLSACIRVNWFKQAKILTEKGKNTLELVFQATTPAVARVSVAAFSVMLASRGWKLLAYSVEHTTVNMTLQHVGAEDQTILDQLAELSLFQTIAKQFLDVIPIPRELFDSFASKTYEAQRQRFDDAYQAIGVRAANAIRILARNDPQKIQRYLREFILKNISATQPDADVRFVDDEHITMIFKRIDPLVMNGQRTLTESMFKKLGYEVSGSVFQNLLSFTVRLSEKPPLEPVSRKKIVQALIDEMSCDSAEEAFAFEKAQLEEVFPEDYPWTITEVGDRLTQMYRELGIDVEIEYFEGGFTLKYRTCPYYKLVKSRQKTWLCNVRKDTIEYVISRVTHGKQGKVKIIRSLLQNEHPCEYAVFLTGFLEKEQEAS