NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308405_1024785

Scaffold Ga0308405_1024785


Overview

Basic Information
Taxon OID3300031875 Open in IMG/M
Scaffold IDGa0308405_1024785 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MS13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1912
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308405_10247852F000642GAGGLQEISIALAICAVGAAVWYMRRRDAGAGRVRGWLLVYDDLGGWRALPAMYADSGVVADGVTYPASLPAVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVSALQSLAAQILALVGER
Ga0308405_10247853F001381GAGMQYVVATLYVLLWLALAAAAALRLPLWVLPAALVQLAVAYVMLRAWLTAAGGDD
Ga0308405_10247854F000855AGGAGMDWLEDFWSKVVGWWDHVSANVYNGIVAFVNSLVEIWNGWMDALLHPAQAMPSSPALRFIVDWLGDIADYTRLMYMLVDYVAYASVVQQALIAQLTIVTIGLGFRAWLVIRRVVLVS
Ga0308405_10247855F011940N/ARTPTLTRTPSPTWTALPTATRDPYQPPSAVPRYTLAPVTPPPLGDDVSWDGSLVGDLLDGLEALGRAVAPPAGRICNLPAPVLADAPEYGFRDAFPDFILGLCGFLGVASPVLNFVRLPVTLMVIGFVFWSAWRVFRSLS
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