Scaffold Ga0315297_10433598

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315297_10433598

Scaffold Ga0315297_10433598

Overview

Basic Information
Taxon OID	3300031873 Open in IMG/M
Scaffold ID	Ga0315297_10433598 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1104
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.536	Long. (^o)	-110.4254	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001713	Metagenome	648	Y
F007518	Metagenome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315297_104335981	F007518	GGA	MTDWTKEEDEAFNAVEHQSKHIIKDMGQPYYFDTYVSPSQRNHVLEEVAKEFDKMKAFGDTAHSFAT
Ga0315297_104335983	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMEYEQDEEGTYNENISDVIYQNISVMGIFTDQQFKELEMEGTMRLSSHLLAEADEAKIAAYEG

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