NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315297_10063783

Scaffold Ga0315297_10063783


Overview

Basic Information
Taxon OID3300031873 Open in IMG/M
Scaffold IDGa0315297_10063783 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2831
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.536Long. (o)-110.4254Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034061Metagenome175N
F048156Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0315297_100637832F034061N/AMCFEKLLGLKGCQISEPSTGLYIDDLGINTTLLGQLITDQYNTGIELFEAKRAFAWRKLSSDMLTRLQATMKADTIIENKRIGQVLTNASNIDLALGAGRYAGIRVKVDPNNTSFLNFYLSTLQIDIYTMATPVEILVFDMSTLKLIDSFDYVSEAVEEFIGRTFKAKRRKLDLAFVYESLYDTTKMITKKGACTDCGGRLKEAHICPFVDAIGIELTTDGFNVLSSLSKKYTQGMSFVYNVNCDRESWLCSIGGLMAMPLAYATAVEIFNYALTISPNQRVNTAVSVNKGNKVFATSDATEGIVAARDIAATRYNEELSAMLTNMRLPDDRHCFDCNKNYKYVTALP
Ga0315297_100637834F048156N/AMNLLKTIIERLNQRVEVANIFDQIYPLCELNANGNDKAWVHYIGNGQAEVVTNFDAKQGTLFWAKRGKVSVTKTESLKVSGCKSLYLTTFPLTAYAVVRKSHLPCDSEDSQDWIASRIYRLISGTDTDFKQAIGVIQYEVIPNGYINEIKSLTANYEWACVAVDVDVNVVTSSEDGCYDVCATGDIPLPDLQPCVP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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