Scaffold Ga0326511_10153143

Overview

Basic Information

• Taxon OID: 3300031867
• Scaffold ID: Ga0326511_10153143
• Source Dataset Name: Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2163
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5357
  • Long. (^o): -121.7593

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043727	Metagenome	155	Y
F093002	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326511_101531434	F043727	GAG	MTNKEAIDRWAEQIIPAVFKAEDALQKAKPEWKERLKHLGEPGGEDPKKVAGEYCREIATIIVTQGSDYVPDGTIDGEADFT
Ga0326511_101531435	F093002	N/A	MTEQEFDTQVWRRFDVVTTDTGIETTIMNVCFTTRSVRIFVKNAPPEWMPCKRIVTHTTRKGDTADEGTIIEELHNKLLAAEERIVGLKNERQQLTEKIGKNYLADILRAVNMIKEGMTEKKAKLAKVDSALTAIEGILQNIETTN