NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308408_1076117

Scaffold Ga0308408_1076117


Overview

Basic Information
Taxon OID3300031865 Open in IMG/M
Scaffold IDGa0308408_1076117 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)773
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039409Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0308408_10761172F039409GGGGGMQPKVCLVLFSLSNFNRTWTQILRNLGIDYTLCVTTGAGTSASIQTPQGVFAANSADLRGYFRQFDAVILCDNTGNLAATSLINYSVFWMRWNAPEDPAFLFFNPHFSAVISGEYNTNFPSDFPIVRPDPSDIAGTLYPADGGSATGGELLIQA

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