Scaffold Ga0315280_10001944

Overview

Basic Information

• Taxon OID: 3300031862
• Scaffold ID: Ga0315280_10001944
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34384
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5094
  • Long. (^o): -110.5094
  • Depth (m): 88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F029929	Metagenome	187	Y
F069685	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315280_1000194421	F069685	GAG	MSEENKGKAQEDVEALKAKITELQAENEKLKTAVAEATQTLTAYVEREKEAVIKQILEKANLSEDELKKLDLPQIKLMQKTVDSVKGTVKNIRSAGAGNTSEGGLTVGDLYHKE
Ga0315280_1000194426	F029929	N/A	MVLLGLPIFQQSVDAELYLWLLEEQKRRGARTVQEVIRQILREARAEAEKHG
Ga0315280_100019447	F006925	AGGCGG	VAVEVSVLENFGREAELKKKWMRMWANLGKRILRMPKWMQDIVLEDINTAIKNRLAVMEMIQNANRNH