Scaffold Ga0315280_10001274

Overview

Basic Information

• Taxon OID: 3300031862
• Scaffold ID: Ga0315280_10001274
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43641
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5094
  • Long. (^o): -110.5094
  • Depth (m): 88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005111	Metagenome / Metatranscriptome	411	Y
F007903	Metagenome / Metatranscriptome	342	Y
F008012	Metagenome / Metatranscriptome	340	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315280_1000127415	F005111	GAGG	VMTTGFDEFDNRIHDLVERENECDDLFKDIKNGNGENSLRYLALRDACKELRKGIFRSAMSAGLTRESIKMEIKEVRSETIATNAKQT
Ga0315280_1000127421	F008012	N/A	MVDKLTVAAGILLVLAGLTGLIYGAGINLTAMMVRGATDYSFISAYIMEWTFVLLAGLVLTANGVKRK
Ga0315280_1000127426	F007903	N/A	MADDITVLMNSGELGHLLRDYFEAKFGAALDYFVIEGQMSPDVRGDMGVTGTYRKKAGDKDVFFTITVNLSSHTLQNLQEYS