Scaffold Ga0315280_10000002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315280_10000002

Scaffold Ga0315280_10000002

Overview

Basic Information
Taxon OID	3300031862 Open in IMG/M
Scaffold ID	Ga0315280_10000002 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	628614
Total Scaffold Genes	677 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	544 (80.35%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5094	Long. (^o)	-110.5094	Alt. (m)		Depth (m)	88
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013170	Metagenome	273	Y
F029354	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315280_10000002259	F013170	N/A	MSTHLHTTITKKTDDILEQLAKTYGTKSRVIEQAVATLLRVEKVGSCDDCAVKSKVGEQTKLREALDLTSIERKTLESLVEVAVGDKTVEDFAKSQRAEAKHFIEILKGTVPWKTPSNFKEFALVLEEIRNLTRVFDIPSYSELDSTAILRPKVFKRLPEVVALQVATILEGVGVSFDLRMMGDDIAVKMVRFEVFPLRKKEFDEILSQQIEKRLANVTPSLFKNTLVLVGPAFMSWAEKHLEEPLTDLSSMIEDVRVALGTDELPKEPKDFVRDLLSACMKMNWFKQAKTIIEKDENALGLVLQVTMPSLARLSVAAFSVMLATRGWKLVNYSIEHTTVNMSIQYVGAEDQGLLDQLTESSLFQTIGKQFLDFVPVPRELFDSFASKVYETNRRKFDETYRSTGVRTANAIRMLARNDQERIKRLSQNFIVKSVSVAQPDGEVRFVDDEHFTLIFKRVDPIVMNSHRTLIESMFKELGYDVSTTVFQNLLSFKLKLLEKPVLEPMPRKRIMQTLVDELSSCNSAEEAFALEREQLDDLFPEDYPWTTKEVGDRLIDMYRELGIEVDIEYFEGGFTLKYESCPYYKLVKTQQKTWLCNLRKRTIDYVISRVSHGKKAKIKIIKSLLQNEHPCEYAIFLTGFLEKEEDSSQD
Ga0315280_10000002518	F029354	GGA	MEEFEEKFIKPIVNASYPGTLAALSLTVLQVTGLSGTTATPLLLKLTLLTGAATFLLSAFSIFFYSIYPTRKRLWTSAAMMFLVGLFCLIASVLLLFTI

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