Scaffold Ga0315319_10005141

Overview

Basic Information

• Taxon OID: 3300031861
• Scaffold ID: Ga0315319_10005141
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5081
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F006919	Metagenome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315319_100051412	F002715	GGA	MPEHELQSVKLEVGLLKNEVEVRGKQIETLLQKLDLTTDKLQQLTVQIIQLNTRQEDYLWHSTSMTDEFKILHTRIGDLHDKQLAAQKDIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD
Ga0315319_100051413	F000245	AGGA	MKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPNSDMMIHVYLRKMTPPKKGMMAFNYQLEDK
Ga0315319_100051414	F006919	GAG	MKSFVQHLKEFTIKSTSDIVFEVGSQGQASSALKIPISGPMFKRIWPDTIRAIVFHVLDAEDIYDLKKLEGKKKSISAFFSMMAKQMESGIAGGGGVVAELEADVIVSAKDDIMSQVDKAGRRWVEMSWFENAQGWGNPPGFNNVERGLDDLIRNLVLKHLEPIIGNRARTEHEFILWGNMKRELKDSKKLSLVIKDYFDGVEKVIKDNKEVMGSIFYGYAKSKRQTDNAWDEQIVNNIKIKKLHYIPKDEEIEAEEQQENIDAFVKKYSSISAKAWSYSSELEIYTRDVVARNRPLQIKGRA