Scaffold Ga0310892_10081963

Overview

Basic Information

• Taxon OID: 3300031858
• Scaffold ID: Ga0310892_10081963
• Source Dataset Name: Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1712
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6475
  • Long. (^o): -79.9369

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004196	Metagenome	449	Y
F027241	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310892_100819631	F004196	N/A	TLDDALIRQQPVTAIGLKRLAQLLRTTEEAIRNRATELGVSLVIGEGDEAIDTRAIRCTDDEYVDPLLERLKDVYGK
Ga0310892_100819634	F027241	AGGCGG	MLRAKAEQERDPEARAEWQYTAWGYLILANQFERNGCKNISYASFPRIRDLDEEAA