Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10221562 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1479 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001299 | Metagenome / Metatranscriptome | 727 | Y |
F026501 | Metagenome / Metatranscriptome | 197 | Y |
F085210 | Metagenome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315909_102215621 | F085210 | AGGA | MFVIPTGDALVSYIKDFTGSTNDAEVKQCIFLAELTMRNIELPALRSDPYAVENIGVTDSEGYIPIPSDMNKPILFFKQGNPGGTSSSQTGPWIVYDRIGDRDIITQGMIAQLYLQPVNVPAVIRGKFSEVADTYH |
Ga0315909_102215622 | F001299 | N/A | MSDDLNKPEYLSDTDPEKNYDYWRQDHGGTVTNHNGIADVLLKNDKLYNAMKGDWKRTSLSGSKNIITTTGREDGKFYIKREQKNAEAVARRCQAYRKAVEAGHNDPLAPIGDDGKLTYKWMDLPNVVSIRISDQYFGGMPWAAIKHDRNLKAQFYRVVEREYNQYVCYPGGKLPIPVDVPYPTRAGEKRFFKGI |
Ga0315909_102215623 | F026501 | N/A | IVNSNTSINRRNVERGDTIQTYEGDFNYTYEIYDSWIMDQAGVSDQIYFMNEDVLQWGSLRDLGPNNEVFSNADASLDQFLMEGTLIVRNPAGVGVLHNISASGAAVSGARTSTFVQRVNTGAGDSY |
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