Scaffold Ga0315909_10216779

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10216779
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1501
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040592	Metagenome / Metatranscriptome	161	N
F073460	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_102167792	F073460	GGAGG	MLQSINVIANSLITIGGLAFYVMLFTKIGDGVKQIDQFGKASYYTIKASLALVVAGALLNVLLLTTPPFTEVVMNVGLGGIFMWAALWHGKKFGVLTGVKAIDRKTATYRVPTRVEDAK
Ga0315909_102167793	F040592	AGGAG	MAQDKNSIMLVVAGFFGSLIAVGKASHGNMRDNLLAISAGTSSAYFLTPVVFSLTGIEASQQTMSAMAFLLGVLGQRGVEIVIGKIFPEAKNAPVD