Scaffold Ga0315909_10191087

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10191087
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1634
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035768	Metagenome / Metatranscriptome	171	Y
F039640	Metagenome / Metatranscriptome	163	Y
F062765	Metagenome / Metatranscriptome	130	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101910872	F039640	N/A	MNIELLLQQSQKTAGEIDILHYTNLVLQEACRLIKDTPTTAAFTTFDLAVAETQRADCFKSVYNLIVKNIENANT
Ga0315909_101910874	F062765	N/A	MGPVSLGWYRTRGLTQTKQHVGEHDCMLYKAGEAFTSESITTHYSCGRLDVHGVPGEPYGDEINVPPMLSTDWALFGNWLDTVETASVWSLKDLVTAYQQHNPPITWDTHE
Ga0315909_101910876	F035768	AGGA	MKITIEDRLLAKYQAQQMQLRDRGDEEYRAKVEKKAFEQIIAERVRRNLRLGLDKGTNVDLEV
Ga0315909_101910877	F081346	N/A	NKPITHINPPNNVPNRVIPPKPGTYNEVVVPETEANPDKPKKPRKPRK