Scaffold Ga0315909_10139178

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10139178
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2020
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004668	Metagenome / Metatranscriptome	428	Y
F048273	Metagenome	148	N
F093778	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101391782	F093778	GGTGG	MDAELQALDAAMAAAAVHGWQVILIDQIDGVWTADAGLPNSWDEPEQRATGATRTDALLALTAALESR
Ga0315909_101391783	F048273	GGAG	MTPRQIENLIERLDSHSAKLDEVRSDLDRIKGGLVVAGALLFSVLVPLIASLLSK
Ga0315909_101391786	F004668	GGAGG	MSTSDHIEQIHEHGWTRVDTAPGEWVAVVPNDNHTAFGGTLWKVAEDGKEYAEGVTAGYPVSAALDYDAAGRALAVIIKQEMSQ