Scaffold Ga0315909_10134747

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10134747
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2062
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F016662	Metagenome / Metatranscriptome	245	Y
F081267	Metagenome	114	N
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101347472	F007525	AGTAGG	MKTYEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEIERGGEMSLSLPNLVNGELSDEDVTIVRYSDDLEAAGINDDIQLTQFIKTISNAGFEVYRMNPWWELFAHNDDMGEIYETFYEAIDAGIDYILDDRGWD
Ga0315909_101347473	F081267	AGGAG	MSYEYHWVVVYDEDWGAFMVDAETTIMNMAEHPGLIYNKTSGRWEDLEEGSELEAEYQRLEEILAYQLTRLDIPKKV
Ga0315909_101347475	F093864	GGAG	LYNYNVEFVLEAMVIITNVSFDEPDLSDEFIIEEARQNIISYYKIDPEVLHLQDVIVHEV
Ga0315909_101347477	F016662	GGAG	MVYLVATTEVIYDEQYIIKEMLATGEYGIHGHPISHEAIVEFIKDREWQIEHNLFLDKFDVPAQISIKDEDGTDLFFARNKYEILDNYPQV