Scaffold Ga0315909_10129220

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10129220
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2118
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036214	Metagenome	170	Y
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101292203	F082606	N/A	MSLVVLSAQCSGMVAPVIPLSQKTYKMSPNGRGVRAERDLWRFHPGMPCYVRGWPQVEATVIAKVEGCSWPTYLVQSFATGATYQISQLYLSKRPIEQR
Ga0315909_101292205	F036214	N/A	MDNEAWDWMTLKPDPTSAFNIEKEARRLENTPNAGPIAAQLYRAWNMQQTLLQQATNRIAALELQLMKSQADA
Ga0315909_101292206	F097251	N/A	MIILTDSQIVELNNRIGQIQRLIESAQVIKSGGAAQPKAITEVAEKPSIVGKTRKAKRKRGALNEQKVAEIKGRLAAGGESAQKIANDYGVHVTTVNLIKYGKTWRNVQASA