Scaffold Ga0315909_10104920

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10104920
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2426
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_101049202	F009004	AGG	LVTHINLKTMKTEFSKVIDFLETQQQENKLNTNQLHLIIQTLCTFLDDEQLQEVENLFNQFKK
Ga0315909_101049203	F034772	N/A	MKNLIDYFTPRTQEHKSFLKHFLGTLTAFIVFGGMFYCLMYLKAL
Ga0315909_101049204	F009958	N/A	MENRNLEFWNKGWELTYEFLGWQYSIAGTWEFKDYDEVSEFAFIELDVDVSEKWIIETDDNLQPHIINIRILEDVRLEMQEAINSDLVHYNFWEWKASNDESNYNFYHEL
Ga0315909_101049205	F006463	N/A	MNTGTIYEQMDWWKRQWRGSFDLHLYLEICRIKKNENQIQKPMKRFKATFKTYAYVGAPVKLETRIVEAYDTQHVKNLIQKNDDIIIEIKQIEK