Scaffold Ga0315909_10097720

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10097720
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2541
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F055552	Metagenome	138	Y
F090097	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100977203	F041090	AGAAGG	MKSEITSGSSGNIVRLSVIRSERRIASSPYGPVKQGLTTLQRTDRDQALTELLNSLENVVADLNFKSYTALDTLAIAIQGARVALSATAIDEDFINADGS
Ga0315909_100977204	F090097	GGAGG	MKEISRKRVSGKQAIHYRNYRRARDRALVRLSQAYPETYKELLELEKVTDETTGAKWFDIDGSNSLIVGVHTGGGEREQTSDPADNQEREGDSK
Ga0315909_100977206	F040536	GAGG	MDKMGKLIAFHPVRSGLKLFYEVIEPDGETRWGGERVFDAVSWLHLAPKGSRLLVSGWESDDLDALPVGQPLDVTELYQTLKGND
Ga0315909_100977207	F055552	GGAG	MNQEYWQAKANLCRQVGIEQLMAGDIKNGNRNLKRMVRAMEELNLIKAVEEDKSAEDMWASLITNGLLLAGEDKTNG