Scaffold Ga0315909_10094373

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10094373
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2599
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023810	Metagenome	208	N
F045060	Metagenome / Metatranscriptome	153	Y
F070039	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100943734	F045060	AGGTGG	MNYDEWAAIGHANGWLGVRRNDSATSGAGAKAMTVRAGSQRAKLLATYFREQYLTDEEAGRASGLALLPKCCYWKRCSELRQAGYIKPNGKTRISSAGVEQQVCHITAKGIQVLANIA
Ga0315909_100943737	F070039	AGG	VTPALIELFVDRLCGMYPTTNIARNTVKNAWVKDEMLLDASEDDAKTVLKMAESLGHYPNQYEVKSLFQKVMGVRQAEVGCDECDSTGFIYTDSDFENDSIKTRYVKSCKCRTF
Ga0315909_100943738	F023810	N/A	SQVSGQEQHHYRGRRYDVSIETPIEFELEQYKDRVDAMQMANELLREERDRYKDAADSLHLELDACRATLKQAESVISRLRTHIAQGVEL