Scaffold Ga0315909

Basic Information
Taxon OID	3300031857 Open in IMG/M
Scaffold ID	Ga0315909_10088333 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031857 Open in IMG/M

Scaffold ID

Ga0315909_10088333 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2711
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2711

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.7464

Long. (^o)

-83.3444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007111	Metagenome / Metatranscriptome	357	N
F007855	Metagenome / Metatranscriptome	343	N
F032960	Metagenome / Metatranscriptome	178	N
F055669	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100883331	F007855	N/A	LVREMSAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCRDGGLFGLFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAGELT
Ga0315909_100883333	F007111	GGGGG	METTILANGQPVGKFGSGSMKGIDQTALEGIGSIVGPKGGGKSPTYDVLVKWIERVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDQGVRGKSSSVKAPRSPFQYRDKFPPAQAMADWIANKEKAVVPTYSRELKRMRTKQEQGLVDGRSVAYWVFQRGTRATNFMSNALSPEAIDVLVNTIAETLGKSISVATKL
Ga0315909_100883334	F032960	N/A	MATTVLSGSPQAATPVYNKMLFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVAKVVETLIAPTKPTLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTVSGRVAFAGNLEQLELATWSGGLYFPSGAIVNDTNRMLTTPTTRTVYADGYGWLSIGQFNYGVERAYIQYWSATGATFARQFDVLASSVSGSNVIRFGVGPMNLKALTSGQCLDGNPGDYLFQGNAGDFYDVYFSRGANSTIRQRYVIGQCQRFNSIPVHFQNKYGGIDSYTFTLKNRKRANISRQTFGYNSDVYATTTYDKVWAGEFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0315909_100883335	F055669	N/A	MSVTLIAYPLNESNAEVPYVLDTMGEIDIALTFSVEDIADITKRRGSFSKTITLPNTTTNRACFGYAYNIQSF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315909_10088333

Overview

Ecosystem & Geography

Associated Families

Sequences