Scaffold Ga0315909_10073084

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10073084
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3058
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F015420	Metagenome / Metatranscriptome	255	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100730841	F003299	N/A	MKMYKVVFKTFDYWNGPVKLVTRIIEAYDANHVKQLIQKNDDLIMLIEEI
Ga0315909_100730842	F003327	N/A	MTEFTQLAIEVQNAIANGEYTHQKYLQFREWYFQNYEGSKRNAVRDFKMFDLMYGLDVPIKNDSNEDV
Ga0315909_100730844	F015420	N/A	MKKIINYFTPVGAEQIAFAIAMLIVTTVILSILFLFTFLELIL
Ga0315909_100730845	F071222	N/A	MDKEQIMTIILAEWESLYDQAKESADAFGRKDEATIRAYAQWYAITNLIDKINEENN
Ga0315909_100730847	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYSCEETGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYRTTYVPRTRYQERLAYKLKVKTIYKDRIVQKAQAKATRPKTRGNLNLLFVGVGIGLLLSYLFKFAREKYLF