Scaffold Ga0315909_10070075

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10070075
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3139
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005146	Metagenome / Metatranscriptome	410	Y
F020863	Metagenome	221	Y
F051794	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100700751	F051794	GAGG	MKATDKRKANAEKRAVWLRNYQRARGRAQTRLAQQYPDQYKAILEQERLSDEANGKAWLDITGTTDNSDGVSTDTDGYDNAPRPKQTD
Ga0315909_100700752	F005146	AGGAGG	MKLINFYEVADRRSDSTWGGASASQAIEWFRRGLDNKLFVSVWNEEDIEEPKLVIDKIDITALVLATIVNEKEKG
Ga0315909_100700757	F020863	AGGCGG	MQTTMEDLRRLVGVLEELVRPLLEGEEVEDTYESNKRPHLVLQEGSKTYGRAFRVHFSGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGQMISEKEEASK