NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10068051

Scaffold Ga0315909_10068051


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10068051 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3199
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009600Metagenome315Y
F010908Metagenome / Metatranscriptome297Y
F011218Metagenome / Metatranscriptome293N
F025437Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100680511F025437GAGMQMRPFEIRQLKVSKEQYFARLGFADNGGRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFESMQVELNKLNDVVAELSKYKELYLTLKKTFDE
Ga0315909_100680512F010908GAGGMKQILSPFQKYECFAVDGVDYLVIDYTIIQDSDYNLVEWASVMKFKRLKDHKHFTMPITKIITNHQEGRAKLCKCK
Ga0315909_100680517F009600N/AMRLSDSRQLTYKIVVGKVPSLNAFYASKHWTARVKAKELASKEVMSQLEKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLNLVHDTTIPKDTAEITFTGLLVTE
Ga0315909_100680518F011218N/AYNLNLNDRMNNEQQAKEAKQQQGNMQYYTNPAKRRKIDFILEECATLMANCESDYNSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN
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