Scaffold Ga0315909_10066984

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10066984
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3232
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033360	Metagenome / Metatranscriptome	177	Y
F053782	Metagenome	140	Y
F102503	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100669842	F102503	GAGG	MTQRKNISQPDEAWSAWDRAAAKMDVTLSQLIFEAMNEHLGLFLTRKTKKRPRTAKAARKRLKRN
Ga0315909_100669845	F033360	AGGA	MAEKKENWLPWIVAAVSVFAMLRNQQPSDKPQPKELKAVVSQTLPSIRSAYKQAFLEAASKIESGEIKDQEAWTKFIADNAGAKQREALDRVYEAIDKLDLPASFAGKESEIAKINREIAGAW
Ga0315909_100669847	F053782	GAGG	MNLSNGEKGMFAVIGLCVFSWFFGSSPKPDPTQCDIPSSDLIQQVATVRDSLTVQPAPVDDPKPIPSPSDKPSKIEILVFVSKNCPPCEKWKRCEMQKFLDAGWSVGIIEDHPFPVTPRFEVSKGSDRKDHVGYLTFEQAKGLVK