Scaffold Ga0315909_10064178

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10064178
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3320
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F012774	Metagenome / Metatranscriptome	277	Y
F017132	Metagenome	242	Y
F040624	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_100641781	F040624	N/A	MKSEKVMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSIRLERLKERFAKVEKQIIELKTKK
Ga0315909_1006417810	F012774	GGA	MKDIPIILHIDLENQSVNGWLEENRYIIFSELVRYSKKLLTEDLDNVQAIMVSNHYDNLVFILKRENLKLTLEKAMEYFMDIEEYEKCAEIRDLDILIQNLENETGNTKTGKSNQRKSKING
Ga0315909_100641783	F006935	N/A	MKEQYAKQIIEWAEEAKQYLTIRKEIILDENTTDQQLGSIIRQMYNSKVQTQNETIENTKQNTK
Ga0315909_100641786	F017132	N/A	MIRKIETAKVGNDLYEIVKKLPIQRFTTELTGEKADTLKQYYRVDKILKFNQTMEYLFVNKIDELEII