Scaffold Ga0315909_10059292

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10059292
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3490
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F011077	Metagenome / Metatranscriptome	295	Y
F044490	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1005929211	F011077	N/A	MDNNLTWDEGLVWKGWTYSPTANRYYFDDIGNESLAAFWSDEFLN
Ga0315909_100592924	F007112	GGA	VHTLHYIAVQADSKQQAFDKVVVSLLPREDGYRLADWSDWHVVGGGRWSSNANKENNLMAGYNDDPTDVLGFSEDKEKFQEALVSVGKFKAHAMNRAIKEFKPDKFISDMVDYASEGGRSEYNGDTIMLAYTIKEVAEMLMGGWTPDSGLYDLEENIAEATYLKERLDKPDQAPLQYLVPVDFHF
Ga0315909_100592925	F006844	AGGAG	MAKWEIEVIFEPTGDYMNFEYETDNEDEDSIFNEVANQLSIVPNLVEKNEEE
Ga0315909_100592927	F044490	AGG	MRIRVLRASKEEKVAVAIGRLLSDFHLDLEKVGYYLAKALPYTVYRRALEVLASAEFQENEVEQNKIGYRSDRLY